Ferroptosis-centered Disease Response Information
General Information of the Disease (ID: DIS00045)
Name |
Hereditary Leiomyomatosis
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ICD |
ICD-11: 2C90
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Full List of Target(s) of This Ferroptosis-centered Disease
Phospholipid hydroperoxide glutathione peroxidase (GPX4)
In total 7 item(s) under this target | |||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [1] | ||||
Target for Ferroptosis | Suppressor | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Drug | Icariside II | Investigative | |||
Responsed Regulator | hsa-miR-324-3p (miRNA) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
Cell migration | |||||
Cell invasion | |||||
In Vitro Model | ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | |
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | ||
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
In Vivo Model |
A total of 30 male BALB/c nude mice (4-6 weeks old; 18-23 g) were randomized into four groups (7-8 mice per group): i) control group; ii) treated with 15 mg/kg ICS II; iii) treated with 25 mg/kg ICS II; and, iv) treated with 35 mg/kg ICS II. ACHN and Caki-1 cells (1 x 107) were suspended in 50 ul MEM media mixed with 50 ul Matrigel (BD Biosciences) and injected subcutaneously into the right flank of mice with 1.5%pentobarbital sodium (60 mg/kg body weight; intraperitoneal injection) under anesthesia. Weight lossof more than 20% was considered a humane endpoint.
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Response regulation | Icariside II (ICS II) treatment triggered ferroptosis in renal cell carcinoma (RCC) cells by downregulating GPX4 in a p53-independent manner. Furthermore, ICS II treatment resulted in upregulation of miR-324-3p, which negatively regulated the expression of GPX4. | ||||
Experiment 2 Reporting the Ferroptosis-centered Disease Response by This Target | [10] | ||||
Target for Ferroptosis | Suppressor | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Drug | Lycorine | Investigative | |||
Pathway Response | Ferroptosis | hsa04216 | |||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | ||
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | ||
Response regulation | Lycorine could inhibit the proliferation in human renal cell carcinoma (RCC) cells. The anti-tumor effect of lycorine was associated with the induction of ferroptosis. After lycorine treatment, the expression levels of GPX4 in RCC cells decreased, whereas those of ACSL4 increased. | ||||
Experiment 3 Reporting the Ferroptosis-centered Disease Response by This Target | [8] | ||||
Target for Ferroptosis | Suppressor | ||||
Responsed Disease | Adrenal gland pheochromocytoma [ICD-11: 2C90] | ||||
Responsed Drug | Tetrachlorobenzoquinone | Investigative | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Apoptosis | hsa04210 | ||||
Cell Process | Cell ferroptosis | ||||
Cell apoptosis | |||||
In Vitro Model | PC12 cells | Adrenal gland pheochromocytoma | Rattus norvegicus | CVCL_0481 | |
Response regulation | Tetrachlorobenzoquinone (TCBQ)-induced ferroptosis occurred as a result of iron accumulation and inhibition of GPX4 expression. Mechanistically, TCBQ promotes the iron import into cells by improving the expression of TF and TFR1, and the complex of TF and TFR1 is internalized by endocytosis in Adrenal gland pheochromocytoma. | ||||
Experiment 4 Reporting the Ferroptosis-centered Disease Response by This Target | [11] | ||||
Target for Ferroptosis | Suppressor | ||||
Responsed Disease | Hereditary leiomyomatosis and renal cell cancer [ICD-11: 2C90] | ||||
Responsed Regulator | Fumarate hydratase, mitochondrial (FH) | Suppressor | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
In Vitro Model | UOK262 cells | Hereditary leiomyomatosis | Homo sapiens | CVCL_1D72 | |
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | ||
HT-1080 cells | Fibrosarcoma | Homo sapiens | CVCL_0317 | ||
Response regulation | Hereditary leiomyomatosis and renal cell cancer (HLRCC) is a hereditary cancer syndrome characterized by inactivation of the Krebs cycle enzyme fumarate hydratase (FH). Mechanistically, the FH sensitivity to ferroptosis is attributed to dysfunctional GPX4, the primary cellular defender against ferroptosis. | ||||
Experiment 5 Reporting the Ferroptosis-centered Disease Response by This Target | [12] | ||||
Target for Ferroptosis | Suppressor | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Krueppel-like factor 2 (KLF2) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
Cell migration | |||||
Cell invasion | |||||
In Vitro Model | HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | |
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | ||
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | ||
ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | ||
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
In Vivo Model |
BALB/c mice were purchased from the Animal Core Facility of Nanjing Medical University. Injection into the tail vein of 6-week-old male mice with Renca-luci (luciferase) cells (1 x 105 cells) was adopted to build the model oflung metastasis. Before lungs were harvested after 1 month to assess pulmonary metastasis, lung metastatic nodules were tracked with IVIS spectrum imaging system in vivo or not (n = 5/group). For survival analysis, the time of death was recorded in each group (n = 10/group) after cells were injected. For assessing the effect of liproxstatin-1 (Lipro, Sigma), one week after injection of cells in the tail vein, mice were tail intravenous administrated with 2.5 mg/kg Lipro three times on a weekly basis for two weeks, then lungs were harvested ( n= 5/group).
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Response regulation | Analysis of clinical specimens revealed that there is a close correlation between KLF2 and GPX4 in clear cell renal cell carcinoma (ccRCC). Mechanistically, KLF2 deficiency is sufficient to inhibit ferroptosis on account of the impairment of transcriptional repression of GPX4 and thus promotes the migration and invasion of RCC cells. | ||||
Experiment 6 Reporting the Ferroptosis-centered Disease Response by This Target | [13] | ||||
Target for Ferroptosis | Suppressor | ||||
Responsed Disease | Clear cell renal carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Dihydroorotate dehydrogenase (quinone), mitochondrial (DHODH) | Suppressor | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | UM-RC-2 cells | Clear cell renal carcinoma | Homo sapiens | CVCL_2739 | |
UM-RC-6 cells | Renal cell carcinoma | Homo sapiens | CVCL_2741 | ||
RCC4 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0498 | ||
TK-10 cells | Renal carcinoma | Homo sapiens | CVCL_1773 | ||
HT-1080 cells | Fibrosarcoma | Homo sapiens | CVCL_0317 | ||
NCI-H226 cells | Pleural epithelioid mesothelioma | Homo sapiens | CVCL_1544 | ||
In Vivo Model |
5 x 106 HT-1080 or 1 x 107 NCI-H226 cells were injected into mice subcutaneously. When the tumor reached 50-100 mm3, the mice were assigned randomly into different treatment groups. Brequinar or sulfasalazine was dissolved in dimethyl sulfoxide (DMSO) and diluted in PBS. Brequinar was intraperitoneally injected into mice at a dose of 30 mg/kg every three days. Sulfasalazine was intraperitoneally injected daily at a dose of 100 mg/kg. Liproxstatin-1 diluted in PBS was intraperitoneally injected daily at a dose of 10 mg/kg. The daily injection of brequinar, sulfasalazine, or liproxstatin-1 was continued until the endpoint as indicated in the corresponding figures.
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Response regulation | DHODH operates in parallel to mitochondrial GPX4 (but independently of cytosolic GPX4 or FSP1) to inhibit ferroptosis in the mitochondrial inner membrane by reducing ubiquinone to ubiquinol (a radical-trapping antioxidant with anti-ferroptosis activity) in Clear cell renal carcinoma. | ||||
Experiment 7 Reporting the Ferroptosis-centered Disease Response by This Target | [14] | ||||
Target for Ferroptosis | Suppressor | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Target of rapamycin complex subunit LST8 (MLST8) | Suppressor | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
In Vitro Model | UM-RC-6 cells | Renal cell carcinoma | Homo sapiens | CVCL_2741 | |
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | ||
NCI-H226 cells | Pleural epithelioid mesothelioma | Homo sapiens | CVCL_1544 | ||
NCI-H460 cells | Lung large cell carcinoma | Homo sapiens | CVCL_0459 | ||
NCI-H23 cells | Lung adenocarcinoma | Homo sapiens | CVCL_1547 | ||
NCI-H1299 cells | Lung large cell carcinoma | Homo sapiens | CVCL_0060 | ||
In Vivo Model |
PDX tumor derived from lung cancer patient rinsed in cold DMEM media were minced into fragments 1-2 mm3 in volume. Then tumor fragment was subcutaneously inoculated into the dorsal flank of NSG mice. The tumor growth in mice was monitored by bi-dimensional tumor measurements. When tumors grew to a volume of 200 mm3, the mice were divided randomly into four groups (n = 5/group) and treated with vehicle, 10 mg/kg AZD8055, 30 mg/kg IKE, or both (10% dimethyl sulfoxide/90% corn oil) by daily intraperitoneal administration. Body weights of mice in each group during treatment were also recorded accordingly.
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Response regulation | Pharmacologic inhibition of mTORC1 ( mTOR associated protein, MLST8) decreases GPX4 protein levels, sensitizes renal cell carcinoma cells to ferroptosis, and synergizes with ferroptosis inducers to suppress patient-derived xenograft tumor growth in vivo. | ||||
Ferritin heavy chain (FTH1)
In total 1 item(s) under this target | ||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [2] | |||
Target for Ferroptosis | Marker/Suppressor | |||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | |||
Responsed Drug | Curcumin | Investigative | ||
Responsed Regulator | A disintegrin and metalloproteinase with thrombospondin motifs 18 (ADAMTS18) | Driver | ||
Pathway Response | Fatty acid metabolism | hsa01212 | ||
Ferroptosis | hsa04216 | |||
Cell Process | Cell ferroptosis | |||
Cell proliferation | ||||
In Vitro Model | A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 |
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
Response regulation | Curcumin induces ferroptosis in tumor cells by upregulating the expression of ADAMTS18, thereby enhancing the sensitivity of clear cell renal cell carcinoma (ccRCC) to sunitinib. And Curcumin can significantly inhibit FTH1 and FTL1 gene expression in tumor tissues of nude mice. | |||
Unspecific Target
In total 15 item(s) under this target | |||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [3] | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Drug | Artesunate | Investigative | |||
Responsed Regulator | Cellular tumor antigen p53 (TP53) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
In Vitro Model | Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | |
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
KTCTL-26 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_5872 | ||
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | ||
Response regulation | Artesunate (ART) significantly increased cytotoxicity and inhibited proliferation and clonogenic growth in both parental and sunitinib-resistant renal cell carcinoma (RCC) cells. P53 exclusively appeared in the KTCTL-26 cells, indicating that p53 might be predictive for ART-dependent ferroptosis. Thus, ART may hold promise for treating selected patients with advanced and even therapy-resistant RCC. | ||||
Experiment 2 Reporting the Ferroptosis-centered Disease Response by This Target | [4] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Drug | Erastin | Investigative | |||
Responsed Regulator | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 (HDDC3) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | RCC4 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0498 | |
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
NCI-H1975 cells | Lung adenocarcinoma | Homo sapiens | CVCL_1511 | ||
MDA-MB-231 cells | Breast adenocarcinoma | Homo sapiens | CVCL_0062 | ||
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
PC-3 cells | Prostate carcinoma | Homo sapiens | CVCL_0035 | ||
HT-1080 cells | Fibrosarcoma | Homo sapiens | CVCL_0317 | ||
A673 cells | Rhabdomyosarcoma | Homo sapiens | CVCL_0080 | ||
PANC-1 cells | Pancreatic ductal adenocarcinoma | Homo sapiens | CVCL_0480 | ||
Response regulation | Ferroptosis-inducing erastin or cystine deprivation elevates MESH1 (HDDC3), whose overexpression depletes NADPH and sensitizes clear cell renal cell carcinoma cells to ferroptosis, whereas MESH1 depletion promotes ferroptosis survival by sustaining the levels of NADPH and GSH and by reducing lipid peroxidation. | ||||
Experiment 3 Reporting the Ferroptosis-centered Disease Response by This Target | [5] | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Drug | Everolimus | Investigative | |||
Responsed Regulator | Serine/threonine-protein kinase mTOR (MTOR) | Suppressor | |||
Pathway Response | Ferroptosis | hsa04216 | |||
Glutathione metabolism | hsa00480 | ||||
mTOR signaling pathway | hsa04150 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | |
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
HEK293 cells | Normal | Homo sapiens | CVCL_0045 | ||
Response regulation | Everolimus and RSL3/Erastin could synergistically inhibit the viability and induce ferroptosis in Renal cell carcinoma cells. Mechanistically, the inhibition of the mTOR-4EBP1 axis was found to be essential for the synergistic effects of Everolimus and RSL3/Erastin. Everolimus in combination with RSL3/Erastin is a promising therapeutic option for RCC treatment. | ||||
Experiment 4 Reporting the Ferroptosis-centered Disease Response by This Target | [5] | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Drug | Everolimus | Investigative | |||
Responsed Regulator | Eukaryotic translation initiation factor 4E (EIF4E) | Suppressor | |||
Pathway Response | Ferroptosis | hsa04216 | |||
Glutathione metabolism | hsa00480 | ||||
mTOR signaling pathway | hsa04150 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | |
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
HEK293 cells | Normal | Homo sapiens | CVCL_0045 | ||
Response regulation | Everolimus and RSL3/Erastin could synergistically inhibit the viability and induce ferroptosis in Renal cell carcinoma cells. Mechanistically, the inhibition of the mTOR-4EBP1 axis was found to be essential for the synergistic effects of Everolimus and RSL3/Erastin. Everolimus in combination with RSL3/Erastin is a promising therapeutic option for RCC treatment. | ||||
Experiment 5 Reporting the Ferroptosis-centered Disease Response by This Target | [6] | ||||
Responsed Disease | Hereditary leiomyomatosis and renal cell cancer [ICD-11: 2C90] | ||||
Responsed Drug | Rapamycin | Investigative | |||
Responsed Regulator | Serine/threonine-protein kinase mTOR (MTOR) | Suppressor | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | UOK262 cells | Hereditary leiomyomatosis | Homo sapiens | CVCL_1D72 | |
NCCFH1 (Human hereditary leiomyomatosis and renal cell cancer cells) | |||||
In Vivo Model |
Ten million NCCFH1 cells suspended in a 1:1 ratio of PBS:Matrigel were injected into the right flank of each animal. Tumors were measured twice a week using a digital caliper, and tumor volumes were calculated according to the volume of an ellipsoid. When mean tumor volumes reached 100 mm3, an equal number of male and female mice were randomly assigned into four different groups. Thirty three of the 40 mice used in the experiment developed tumors. Thus, the final group assignment was as follow: vehicle (control group, n = 6, 3 female & 3 male), rapamycin (rapamycin only group, n = 7, 4 female & 3 male), Cyst(e)inase (Cyst(e)inase only group, n = 10, 5 female & 5 male), rapamycin+Cyst(e)inase (combination group, n = 10, 5 female & 5 male). Treatments were administered once every three days via intraperitoneal injection of either vehicle (Phosphate buffered saline containing 30% PEG300), rapamycin (0.6 mg/ml suspended in vehicle, injection dose = 0.6 mg per mouse), Cyst(e)inase (7.1 mg/ml suspended in vehicle, injection dose = 7.1 mg per mouse), and rapamycin+Cyst(e)inase combination (0.6 mg/ml rapamycin, 7.1 mg/ml Cyst(e)inase suspended in vehicle.
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Response regulation | Rapamycin treatment inhibited MTOR signaling. And it is possible to induce ferroptosis in an hereditary leiomyomatosis and renal cell cancer (HLRCC) tumor model in vivo using a combination of rapamycin and Cyst(e)inase. | ||||
Experiment 6 Reporting the Ferroptosis-centered Disease Response by This Target | [7] | ||||
Responsed Disease | Adrenal gland pheochromocytoma [ICD-11: 2C90] | ||||
Responsed Drug | Sodium arsenite | Investigative | |||
Responsed Regulator | Microtubule-associated proteins 1A/1B light chain 3B {ECO:0000305} (MAP1LC3B) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Autophagy | hsa04140 | ||||
Cell Process | Cell ferroptosis | ||||
Cell autophagy | |||||
In Vitro Model | PC12 cells | Adrenal gland pheochromocytoma | Rattus norvegicus | CVCL_0481 | |
In Vivo Model |
A total of thirty-two healthy specificpathogenfree C57BL/6J male mice at seven weeks of age and weighted 20-24 g were purchased from the Experimental Animal Center of Chongqing Medical University. After administration of arsenite via drinking water, the animals were euthanized by pentobarbital sodium, three of the animals were subjected to the perfusion fixation, and subsequently, the hippocampus tissues were rapidly dissected on ice and immersed into 4% paraformaldehyde for pre-fixation.
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Response regulation | Arsenite was able to trigger ferroptosis in the adrenal gland pheochromocytoma cells. Arsenite significantly decreased the expressions of ferritin and NCOA4, but sharply enhanced the level of autophagy marker LC3B, suggesting the activation of ferritinophagy by arsenite. | ||||
Experiment 7 Reporting the Ferroptosis-centered Disease Response by This Target | [19] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Cytoplasmic aconitate hydratase (ACO1) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Autophagy | hsa04140 | ||||
Cell Process | Cell ferroptosis | ||||
Cell autophagy | |||||
Cell proliferation | |||||
Cell metastasis | |||||
Cell invasion | |||||
In Vitro Model | ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | |
Response regulation | ACO1 and IREB2 downregulation in kidney renal clear cell carcinoma were correlated with cancer aggressiveness, cellular iron homeostasis, cytotoxic immune cell infiltration, and patient survival outcomes. | ||||
Experiment 8 Reporting the Ferroptosis-centered Disease Response by This Target | [20] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Metallothionein-1G (MT1G) | Suppressor | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Apoptosis | hsa04210 | ||||
Cell Process | Cell ferroptosis | ||||
Cell apoptosis | |||||
Cell proliferation | |||||
In Vitro Model | 769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | |
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
Response regulation | MT1G affects ferroptosis by regulating GSH consumption in clear cell renal cell carcinoma (ccRCC) cells. MT1G may be a negative regulator of ferroptosis in ccRCC cells and a biomarker of poor prognosis. | ||||
Experiment 9 Reporting the Ferroptosis-centered Disease Response by This Target | [21] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Histone-lysine N-methyltransferase SUV39H1 (SUV39H1) | Suppressor | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
Cell cycle | |||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | ||
769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | ||
ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | ||
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | ||
In Vivo Model |
Female SCID mice (4-6 weeks old) were purchased and used for the xenograft models. Approximately 5 x 106 ccRCC cells were injected subcutaneously into the flank. The mice were treated with vehicle (control) or chaetocin (0.5 mg/kg/day) by daily intraperitoneal injection.
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Response regulation | SUV39H1 expression is frequently upregulated in clear cell renal cell carcinoma (ccRCC) tumors and is significantly correlated with ccRCC progression. Function loss of SUV39H1 in ccRCC tumors contributes the hypomethylation of the DPP4 promoter to upregulate DPP4 expression and induces DPP4-mediated ferroptosis to suppress cell proliferation. | ||||
Experiment 10 Reporting the Ferroptosis-centered Disease Response by This Target | [22] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Cell division cycle-associated protein 3 (CDCA3) | Driver | |||
Pathway Response | Ferroptosis | hsa04216 | |||
Cell Process | Cell ferroptosis | ||||
Response regulation | ACADSB and MYCN are the favorable prognostic marker of clear cell renal cell carcinoma (ccRCC), while CDCA3, CHAC1, and TFAP2A are the unfavorable prognostic marker of ccRCC. | ||||
Experiment 11 Reporting the Ferroptosis-centered Disease Response by This Target | [23] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Lysine-specific demethylase 5C (KDM5C) | Driver | |||
Pathway Response | Pentose phosphate pathway | hsa00030 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | RCC4 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0498 | |
ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | ||
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | ||
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | ||
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | ||
In Vivo Model |
For the xenograft of RCC4 cells, four-week-old female NOD. At 6th week, mice were injected with 100 uL of stable RCC4-EV or RCC4-KDM5C cells suspended in Matrigel Basement Membrane Matrix (Corning, 356234) at a population of 1 x 107 cells into the left or right dorsal flank subcutaneously after alcohol sterilization of injection site skin surface. On day 7 after injection, the mice were randomly divided into 2 groups and treated with Liproxstatin-1 (10 mg/kg, MCE HY-12726) or vehicle control (1% DMSO in PBS) each other day by i.p. injection.
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Response regulation | Poor survival rates of clear cell renal cell carcinoma patients seem to be associated with up-regulation of the pentose phosphate pathway (PPP). KDM5C re-expression suppressed the glucose flux through PPP and re-sensitized cancer cells to ferroptosis. Furthermore, KDM5C deficiency predicted the poor prognosis, and clinically relevant KDM5C mutants failed to suppress glycogen accumulation and promoted ferroptosis as wild type. | ||||
Experiment 12 Reporting the Ferroptosis-centered Disease Response by This Target | [21] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Dipeptidyl peptidase 4 (DPP4) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
Cell cycle | |||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | ||
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | ||
769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | ||
ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | ||
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | ||
In Vivo Model |
Female SCID mice (4-6 weeks old) were purchased and used for the xenograft models. Approximately 5 x 106 ccRCC cells were injected subcutaneously into the flank. The mice were treated with vehicle (control) or chaetocin (0.5 mg/kg/day) by daily intraperitoneal injection.
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Response regulation | SUV39H1 expression is frequently upregulated in clear cell renal cell carcinoma (ccRCC) tumors and is significantly correlated with ccRCC progression. Function loss of SUV39H1 in ccRCC tumors contributes the hypomethylation of the DPP4 promoter to upregulate DPP4 expression and induces DPP4-mediated ferroptosis to suppress cell proliferation. | ||||
Experiment 13 Reporting the Ferroptosis-centered Disease Response by This Target | [24] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Retinoic acid receptor responder protein 2 (RARRES2) | Suppressor | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
Cell proliferation | |||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
UOK101 cells | Clear cell renal carcinoma | Homo sapiens | CVCL_B076 | ||
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | ||
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | ||
In Vivo Model |
Six-week-old female athymic nude mice (Charles River Laboratories) were used for xenograft studies. For subcutaneous tumor growth model, cells were pelleted and resuspended in a PBS/Matrigel Matrix (Corning, Cat# 356234) mix at 1:1 ratio. 2 x 106 cells in a 100 uL solution were injected subcutaneously into each flank.
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Response regulation | The adipokine chemerin, which is encoded by the retinoic acid receptor responder 2 (RARRES2) gene, is overexpressed in clear cell renal cell carcinoma (ccRCC) due to both an autocrine, tumor-cell-dependent mechanism, as well as obesity-dependent paracrine production, and plays important roles in regulating lipid metabolism and tumorigenesis. | ||||
Experiment 14 Reporting the Ferroptosis-centered Disease Response by This Target | [25] | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (AGPAT3) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | ||
SNU-685 cells | Uterine carcinosarcoma | Homo sapiens | CVCL_5083 | ||
Huh-7 cells | Hepatocellular carcinoma | Homo sapiens | CVCL_0336 | ||
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
OVCAR-8 cells | High grade ovarian serous adenocarcinoma | Homo sapiens | CVCL_1629 | ||
SH-SY5Y cells | Neuroblastoma | Homo sapiens | CVCL_0019 | ||
In Vivo Model |
3-4 week-old, male athymic nude mice were used for hosting the 786-O tumor xenografts. In the experiment that leads to isolation of ferroptosis-resistant 1 (FR1) cells , 5 x 106 wildtype or GPX4-/-single-cell clone (originally named as #3A7 clone3, then renamed as ferroptosis-sensitive (FS) GPX4-/-cells in the present study) of 786-O-Cas9 cells were resuspended in 50 ul sterile PBS containing 50 uM Fer-1, mixed with 50 ul Matrigel (BD Biosciences), and subcutaneously injected into both flanks of the mouse.
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Response regulation | Using lipidomic analysis, we found that AGPAT3-depletion selectively reduced the levels of the polyunsaturated species among both ether-linked and diacyl-phospholipids in renal cell carcinoma 786-O cells . Consistently, genetic AGPAT3-depletion suppressed sensitivity to ferroptosis. | ||||
Experiment 15 Reporting the Ferroptosis-centered Disease Response by This Target | [26] | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Protein amnionless (AMN) | Driver | |||
Pathway Response | Ferroptosis | hsa04216 | |||
Cell Process | Cell ferroptosis | ||||
Response regulation | Using univariate and multivariate Cox regression, the study identified two independent prognostic genes, AMN and PDK4, and constructed an IRFG score model immune-related ferroptosis genes risk score (IRFGRs) to evaluate its prognostic value in clear cell renal cell carcinoma (ccRCC). | ||||
Transferrin receptor protein 1 (TFRC)
In total 1 item(s) under this target | ||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [8] | |||
Target for Ferroptosis | Marker/Suppressor/Driver | |||
Responsed Disease | Adrenal gland pheochromocytoma [ICD-11: 2C90] | |||
Responsed Drug | Tetrachlorobenzoquinone | Investigative | ||
Pathway Response | Fatty acid metabolism | hsa01212 | ||
Ferroptosis | hsa04216 | |||
Apoptosis | hsa04210 | |||
Cell Process | Cell ferroptosis | |||
Cell apoptosis | ||||
In Vitro Model | PC12 cells | Adrenal gland pheochromocytoma | Rattus norvegicus | CVCL_0481 |
Response regulation | Tetrachlorobenzoquinone (TCBQ)-induced ferroptosis occurred as a result of iron accumulation and inhibition of GPX4 expression. Mechanistically, TCBQ promotes the iron import into cells by improving the expression of TF and TFR1, and the complex of TF and TFR1 is internalized by endocytosis in Adrenal gland pheochromocytoma. | |||
Solute carrier family 40 member 1 (SLC40A1)
In total 1 item(s) under this target | ||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [9] | |||
Target for Ferroptosis | Marker/Suppressor | |||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | |||
Responsed Regulator | hsa-miR-4735-3p (miRNA) | Driver | ||
Pathway Response | Fatty acid metabolism | hsa01212 | ||
Ferroptosis | hsa04216 | |||
Cell Process | Cell ferroptosis | |||
Cell proliferation | ||||
Cell migration | ||||
Cell invasion | ||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 |
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | |
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | |
Response regulation | The miR-4735-3p mimic increased, while the miR-4735-3p inhibitor decreased oxidative stress, lipid peroxidation, iron overload, and ferroptosis of human Clear cell renal cell carcinoma (ccRCC) cell lines. Mechanistic studies identified SLC40A1 as a direct target of miR-4735-3p. | |||
Nuclear factor erythroid 2-related factor 2 (NFE2L2)
In total 1 item(s) under this target | |||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [15] | ||||
Target for Ferroptosis | Marker/Suppressor | ||||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Ubiquitin carboxyl-terminal hydrolase 35 (USP35) | Suppressor | |||
Pathway Response | Ubiquitin mediated proteolysis | hsa04120 | |||
Ferroptosis | hsa04216 | ||||
Apoptosis | hsa04210 | ||||
Cell Process | Cell ferroptosis | ||||
Cell apoptosis | |||||
Cell proliferation | |||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | ||
OS-RC-2 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_1626 | ||
In Vivo Model |
Female Balb/c nude mice aged 6 weeks were obtained from Vital River Laboratory (Beijing, China). To generate xenografts of RCC, mice were randomized into two groups of 8 that were subcutaneously inoculated with 1 x 10^7 of OS-RC-2 cells stably transfected with USP35 Tet-on shRNA constructs or empty vector. After 7 days, mice were administered with doxycycline every day (20 mg/kg) to induce shRNA expression through oral gavage without blinding.
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Response regulation | USP35 functions to maintain NRF2 levels by catalyzing its deubiquitylation and thus antagonizing degradation. NRF2 reduction imposed by USP35 silencing rendered renal clear cell carcinoma cells increased sensitivity to ferroptosis induction. | ||||
NADPH oxidase 4 (NOX4)
In total 2 item(s) under this target | |||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [16] | ||||
Target for Ferroptosis | Driver | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Tafazzin (TAFAZZIN) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Hippo signaling pathway | hsa04390 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | RCC4 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0498 | |
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
MDA-MB-231 cells | Breast adenocarcinoma | Homo sapiens | CVCL_0062 | ||
In Vivo Model |
One million 786O cells with or without shTAZ were implanted subcutaneously into the healthy 8-week-old JAX NOD.CB17-PrkdcSCID-J mice; both male and female mice were used. Once tumor volume reached 120 mm3, mice were randomized into control or erastin treatment group. The vehicle (ORA-plus) or erastin (0.1 ml of 4 mg/ml erastin) was administrated by oral gavage twice daily for 20 days.
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Response regulation | Cell density-regulated ferroptosis is mediated by TAZ through the regulation of EMP1-NOX4, suggesting its therapeutic potential for renal cell carcinoma (RCC) and other TAZ-activated tumors. | ||||
Experiment 2 Reporting the Ferroptosis-centered Disease Response by This Target | [16] | ||||
Target for Ferroptosis | Driver | ||||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | ||||
Responsed Regulator | Epithelial membrane protein 1 (EMP1) | Driver | |||
Pathway Response | Fatty acid metabolism | hsa01212 | |||
Ferroptosis | hsa04216 | ||||
Hippo signaling pathway | hsa04390 | ||||
Cell Process | Cell ferroptosis | ||||
In Vitro Model | RCC4 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0498 | |
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | ||
HEK-293T cells | Normal | Homo sapiens | CVCL_0063 | ||
MDA-MB-231 cells | Breast adenocarcinoma | Homo sapiens | CVCL_0062 | ||
In Vivo Model |
One million 786O cells with or without shTAZ were implanted subcutaneously into the healthy 8-week-old JAX NOD.CB17-PrkdcSCID-J mice; both male and female mice were used. Once tumor volume reached 120 mm3, mice were randomized into control or erastin treatment group. The vehicle (ORA-plus) or erastin (0.1 ml of 4 mg/ml erastin) was administrated by oral gavage twice daily for 20 days.
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Response regulation | Cell density-regulated ferroptosis is mediated by TAZ through the regulation of EMP1-NOX4, suggesting its therapeutic potential for renal cell carcinoma (RCC) and other TAZ-activated tumors. | ||||
Long-chain-fatty-acid--CoA ligase 4 (ACSL4)
In total 1 item(s) under this target | ||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [10] | |||
Target for Ferroptosis | Driver | |||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | |||
Responsed Drug | Lycorine | Investigative | ||
Pathway Response | Ferroptosis | hsa04216 | ||
Cell Process | Cell ferroptosis | |||
Cell proliferation | ||||
In Vitro Model | 786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 |
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | |
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | |
HK-2 cells | Normal | Homo sapiens | CVCL_0302 | |
Response regulation | Lycorine could inhibit the proliferation in human renal cell carcinoma (RCC) cells. The anti-tumor effect of lycorine was associated with the induction of ferroptosis. After lycorine treatment, the expression levels of GPX4 in RCC cells decreased, whereas those of ACSL4 increased. | |||
Cystine/glutamate transporter (SLC7A11)
In total 3 item(s) under this target | ||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [17] | |||
Target for Ferroptosis | Suppressor | |||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | |||
Responsed Regulator | MIT domain-containing protein 1 (MITD1) | Suppressor | ||
Pathway Response | Fatty acid metabolism | hsa01212 | ||
Ferroptosis | hsa04216 | |||
Hippo signaling pathway | hsa04390 | |||
Cell Process | Cell ferroptosis | |||
Cell proliferation | ||||
Cell migration | ||||
Cell invasion | ||||
In Vitro Model | HK-2 cells | Normal | Homo sapiens | CVCL_0302 |
786-O cells | Renal cell carcinoma | Homo sapiens | CVCL_1051 | |
ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 | |
A-498 cells | Renal cell carcinoma | Homo sapiens | CVCL_1056 | |
769-P cells | Renal cell carcinom | Homo sapiens | CVCL_1050 | |
Caki-1 cells | Clear cell renal cell carcinoma | Homo sapiens | CVCL_0234 | |
Response regulation | MITD1 knockdown inhibited clear cell renal cell carcinoma (ccRCC) cell proliferation and migration and induced ferroptosis in ccRCC. Subsequent overexpression experiments demonstrated that MITD1 knockdown induced ferroptosis and suppressed tumor growth and migration through the TAZ/SLC7A11 pathway. | |||
Experiment 2 Reporting the Ferroptosis-centered Disease Response by This Target | [18] | |||
Target for Ferroptosis | Suppressor | |||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | |||
Responsed Regulator | SLC16A1-AS1 (IncRNA) | Suppressor | ||
Pathway Response | Fatty acid metabolism | hsa01212 | ||
Ferroptosis | hsa04216 | |||
Cell Process | Cell ferroptosis | |||
Cell proliferation | ||||
Cell migration | ||||
In Vitro Model | HK-2 cells | Normal | Homo sapiens | CVCL_0302 |
Response regulation | SLC16A1-AS1 served as a sponge of miR-143-3p, and knockdown SLC16A1-AS1 significantly increased the enrichment of miR-143-3p. And then, SLC7A11 was identified as the target protein of miR-143-3p, and overexpression miR-143-3p remarkably inhibited the expression of SLC7A11. And silencing lncRNA SLC16A1-AS1 can induce ferroptosis through miR-143-3p/SLC7A11 signaling in renal cell carcinoma. | |||
Experiment 3 Reporting the Ferroptosis-centered Disease Response by This Target | [18] | |||
Target for Ferroptosis | Suppressor | |||
Responsed Disease | Renal cell carcinoma [ICD-11: 2C90] | |||
Responsed Regulator | hsa-miR-143-3p (miRNA) | Driver | ||
Pathway Response | Fatty acid metabolism | hsa01212 | ||
Ferroptosis | hsa04216 | |||
Cell Process | Cell ferroptosis | |||
Cell proliferation | ||||
Cell migration | ||||
In Vitro Model | HK-2 cells | Normal | Homo sapiens | CVCL_0302 |
Response regulation | SLC16A1-AS1 served as a sponge of miR-143-3p, and knockdown SLC16A1-AS1 significantly increased the enrichment of miR-143-3p. And then, SLC7A11 was identified as the target protein of miR-143-3p, and overexpression miR-143-3p remarkably inhibited the expression of SLC7A11. And silencing lncRNA SLC16A1-AS1 can induce ferroptosis through miR-143-3p/SLC7A11 signaling in renal cell carcinoma. | |||
Iron-responsive element-binding protein 2 (IREB2)
In total 1 item(s) under this target | ||||
Experiment 1 Reporting the Ferroptosis-centered Disease Response by This Target | [19] | |||
Target for Ferroptosis | Driver | |||
Responsed Disease | Clear cell renal cell carcinoma [ICD-11: 2C90] | |||
Pathway Response | Fatty acid metabolism | hsa01212 | ||
Ferroptosis | hsa04216 | |||
Autophagy | hsa04140 | |||
Cell Process | Cell ferroptosis | |||
Cell autophagy | ||||
Cell proliferation | ||||
Cell metastasis | ||||
Cell invasion | ||||
In Vitro Model | ACHN cells | Papillary renal cell carcinoma | Homo sapiens | CVCL_1067 |
Response regulation | ACO1 and IREB2 downregulation in kidney renal clear cell carcinoma were correlated with cancer aggressiveness, cellular iron homeostasis, cytotoxic immune cell infiltration, and patient survival outcomes. | |||
References